Reference

• cellmaps_image_embedding package
  • Submodules
  • cellmaps_image_embedding.cellmaps_image_embeddingcmd module
    • main()
  • cellmaps_image_embedding.dataset module
    • ProteinDataset
      • ProteinDataset.crop_image()
      • ProteinDataset.image_to_tensor()
      • ProteinDataset.read_rgby()
      • ProteinDataset.set_random_crop()
      • ProteinDataset.set_transform()
    • augment_default()
    • augment_fliplr()
    • augment_fliplr_transpose()
    • augment_flipud()
    • augment_flipud_lr()
    • augment_flipud_lr_transpose()
    • augment_flipud_transpose()
    • augment_transpose()
  • cellmaps_image_embedding.exceptions module
    • CellMapsImageEmbeddingError
  • cellmaps_image_embedding.models module
    • ArcMarginProduct
      • ArcMarginProduct.forward()
      • ArcMarginProduct.reset_parameters()
    • DensenetClass
      • DensenetClass.forward()
      • DensenetClass.load_pretrained()
    • ResnetClass
      • ResnetClass.forward()
      • ResnetClass.load_pretrained()
    • class_densenet121_dropout()
    • class_densenet121_large_dropout()
    • class_resnet50_dropout()
  • cellmaps_image_embedding.runner module
    • CellmapsImageEmbedder
      • CellmapsImageEmbedder.generate_readme()
      • CellmapsImageEmbedder.get_image_embedding_file()
      • CellmapsImageEmbedder.get_image_probability_file()
      • CellmapsImageEmbedder.run()
    • DensenetEmbeddingGenerator
      • DensenetEmbeddingGenerator.get_datasets_that_need_to_be_registered()
      • DensenetEmbeddingGenerator.get_next_embedding()
    • EmbeddingGenerator
      • EmbeddingGenerator.DEFAULT_FOLD
      • EmbeddingGenerator.DIMENSIONS
      • EmbeddingGenerator.SUFFIX
      • EmbeddingGenerator.get_datasets_that_need_to_be_registered()
      • EmbeddingGenerator.get_dimensions()
      • EmbeddingGenerator.get_fold()
      • EmbeddingGenerator.get_next_embedding()
    • FakeEmbeddingGenerator
      • FakeEmbeddingGenerator.get_next_embedding()
    • ImageEmbeddingFilterAndNameTranslator
      • ImageEmbeddingFilterAndNameTranslator.get_name_mapping()
  • Module contents